Nanoscopic Optical Imaging Optical microscopy is one of the most widely used imaging methods in biomedical research. Several advantages make light microscopy a particularly powerful tool for cell, tissue and animal imaging. These include the exquisite molecular specificity, the relatively fast time resolution and the non-invasive imaging nature. However, the spatial resolution of far-field optical microscopy, classically limited by the diffraction of light to a few hundred nanometers, is substantially larger than typical molecular length scales in cells. This limit leaves many biological problems beyond the reach of light microscopy. To overcome this limit, we have developed a new form of super- resolution light microscopy, stochastic optical reconstruction microscopy (STORM). STORM uses photo-switchable fluorescent probes to temporally separate the otherwise spatially overlapping images of individual molecules, allowing the construction of high-resolution images. Using this concept, we have achieved three-dimensional, multicolor fluorescence imaging of molecular complexes, cells, and tissues with ~20 nm lateral and ~50 nm axial resolutions. We hope to advance STORM capabilities to ultimately enable real-time imaging of cells and tissues with resolution at the true molecular length scale. This new form of fluorescence microscopy allows molecular interactions in cells and cell-cell interactions in tissues to be imaged at the nanometer scale. We are applying this new technology to cell biology and neurobiology. |
Single-Molecule biology: Nucleic Acid - Protein Interactions We explore single-molecule fluorescence imaging and spectroscopy techniques to study complex biomolecular systems. An area of special interest to us is the interactions of proteins with nucleic acids. Many essential cellular reactions, such as DNA replication, transcription, messenger RNA editing, and protein synthesis, involve DNA-protein or RNA-protein complexes. Understanding nucleic acid-protein interactions is thus crucial for deciphering the molecular mechanisms underlying many important biological processes. Using single-molecule fluorescence imaging and spectroscopy methods, we directly visualize the assembly and function of these molecular complexes in real time. These experiments allow us to observe transient states and multiple kinetic paths that are difficult to detect by classical ensemble experiments, to probe the dynamic interactions between DNA, RNA and proteins, and to determine the relationship between the structural dynamics and function for these molecular complexes. From these quantitative data, we aim to formulate in-depth mechanistic understanding of these biomolecular processes. Using this approach, we are studying the assembly process, catalytic cycle, and structure-function relationship of several nucleic acid-interacting enzymes, including telomerase, HIV reverse transcriptase and chromatin remodeling enzymes. |
Single-virus tracking: We are developing live cell imaging methods to allow direct visualization and quantitative analysis of cellular dynamics. Our research in this direction focuses on virus-cell interactions and related cellular trafficking pathways. Viruses must deliver their genome into cells to initiate infection. This entry process is a subject of fundamental importance as well as a therapeutic target for viral disease treatment. However, understanding viral entry mechanisms is challenging because of the involvement of multiple entry pathways and multiple steps in the pathway, each featuring interactions of the viruses with different cellular structures. What could be a better way to study viral trafficking than to take a ride with the virus particle on its journey into the cell? To realize this goal, we have developed real-time imaging methods to track individual virus particles in live cells. This approach allows us to follow the fate of individual viruses, to dissect the infection pathways into microscopic steps, and to determine the molecular mechanism of each step. By combining this approach with other biochemical methods, we have studied the entry mechanisms of influenza virus, poliovirus, dengue virus and non-viral gene delivery vectors. Our research also extends to the post entry trafficking, assembly and budding mechanisms of viruses. |
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